HL_9H51_008

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H51_008 not in the Motif Atlas

Geometric match to HL_6GYV_004

Geometric discrepancy: 0.2378

The information below is about HL_6GYV_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9H51|1|A|C|894
9H51|1|A|C|895
9H51|1|A|A|896
9H51|1|A|C|897
9H51|1|A|C|898
9H51|1|A|G|899

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain J

28S ribosomal protein S12, mitochondrial

Chain O

28S ribosomal protein S18b, mitochondrial

Chain a

Putative ribosome-binding factor A, mitochondrial