HL_9H51_010

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H51_010 not in the Motif Atlas

Geometric match to HL_9H3G_094

Geometric discrepancy: 0.1059

The information below is about HL_9H3G_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9H51|1|A|C|1023
9H51|1|A|G|1024
9H51|1|A|A|1025
9H51|1|A|A|1026
9H51|1|A|A|1027
9H51|1|A|G|1028

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain L

28S ribosomal protein S15, mitochondrial

Chain Q

Small ribosomal subunit protein bS21m