HL_9H52_001

3D structure

PDB id

9H52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

9H52|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H52_001 not in the Motif Atlas

Homologous match to HL_6CZR_072

Geometric discrepancy: 0.2072

The information below is about HL_6CZR_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.4

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9H52|1|A|U|654
9H52|1|A|U|655
9H52|1|A|U|656
9H52|1|A|G|657
9H52|1|A|G|658
9H52|1|A|U|659
9H52|1|A|C|660
9H52|1|A|C|661
9H52|1|A|U|662
9H52|1|A|A|663
9H52|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial