9H52 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9H52_001 | 1/A/654:664 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_9H52_002 | 1/A/701:708 | No text annotation | ||
| HL_9H52_003 | 1/A/734:740 | No text annotation | geometric HL_9H3G_023 HL_34789.6 | |
| HL_9H52_005 | 1/A/792:796 | No text annotation | geometric HL_6U8D_003 HL_01957.1 | |
| HL_9H52_006 | 1/A/804:809 | No text annotation | ||
| HL_9H52_007 | 1/A/842:847 | GNRA | homologous HL_6CZR_081 NA | |
| HL_9H52_008 | 1/A/894:899 | GNRA variation | homologous HL_6CZR_216 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9H52_004 | No text annotation | ||
| HL_9H52_009 | GNRA | ||
| HL_9H52_010 | No text annotation | ||
| HL_9H52_011 | No text annotation | ||
| HL_9H52_012 | No text annotation | ||
| HL_9H52_013 | No text annotation | ||
| HL_9H52_014 | No text annotation | ||
| HL_9H52_015 | No text annotation | ||
| HL_9H52_016 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9H52_001 | 1/A/649:651, 1/A/667:668 | No text annotation | ||
| IL_9H52_002 | 1/A/674:676, 1/A/921:923 | Isolated cWS basepair | geometric IL_5E81_401 IL_84227.1 | |
| IL_9H52_003 | 1/A/685:686, 1/A/859:861 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_9H52_004 | 1/A/690:692, 1/A/822:823 | No text annotation | geometric IL_9PN5_109 IL_14190.4 | |
| IL_9H52_005 | 1/A/694:696, 1/A/819:820 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_9H52_006 | 1/A/727:729, 1/A/744:747 | No text annotation | geometric IL_9DFE_030 IL_05502.2 | |
| IL_9H52_007 | 1/A/729:732, 1/A/742:744 | No text annotation | geometric IL_9DFE_030 IL_05502.2 | |
| IL_9H52_008 | 1/A/756:761, 1/A/779:786 | Kink-turn with non-sequential stacking | geometric IL_4LFB_011 IL_46174.6 | |
| IL_9H52_009 | 1/A/762:765, 1/A/777:778 | Major groove platform; stack outside cWW | geometric IL_1NTA_003 IL_74641.4 | |
| IL_9H52_010 | 1/A/762:766, 1/A/775:778 | No text annotation | ||
| IL_9H52_012 | 1/A/830:832, 1/A/855:856 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_9H52_013 | 1/A/834:838, 1/A/852:853 | C-loop | homologous IL_6CZR_127 NA | |
| IL_9H52_014 | 1/A/838:839, 1/A/850:852 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_9H52_015 | 1/A/876:885, 1/A/910:913 | No text annotation | ||
| IL_9H52_016 | 1/A/887:893, 1/A/900:908 | Kink-turn related | homologous IL_6CZR_133 NA | |
| IL_9H52_017 | 1/A/935:941, 1/A/1133:1134 | No text annotation | homologous IL_6CZR_134 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9H52_011 | No text annotation | ||
| IL_9H52_018 | No text annotation | ||
| IL_9H52_019 | No text annotation | ||
| IL_9H52_020 | Left turn | ||
| IL_9H52_021 | No text annotation | ||
| IL_9H52_022 | Isolated non-canonical cWW pair | ||
| IL_9H52_023 | No text annotation | ||
| IL_9H52_024 | No text annotation | ||
| IL_9H52_025 | No text annotation | ||
| IL_9H52_026 | No text annotation | ||
| IL_9H52_027 | No text annotation | ||
| IL_9H52_028 | Major groove intercalation | ||
| IL_9H52_029 | Single bulged A | ||
| IL_9H52_030 | Isolated non-canonical cWW pair | ||
| IL_9H52_031 | No text annotation | ||
| IL_9H52_032 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9H52_001 | 1/A/677:680, 1/A/866:872, 1/A/917:920 | No text annotation | ||
| J3_9H52_002 | 1/A/687:690, 1/A/823:830, 1/A/856:858 | No text annotation | ||
| J4_9H52_001 | 1/A/698:701, 1/A/708:715, 1/A/800:802, 1/A/811:817 | No text annotation | ||
| J4_9H52_002 | 1/A/717:724, 1/A/750:753, 1/A/789:791, 1/A/797:798 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9H52_003 | No text annotation | ||
| J3_9H52_004 | No text annotation | ||
| J3_9H52_005 | No text annotation |
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