HL_9H52_004

3D structure

PDB id

9H52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H52_004 not in the Motif Atlas

Geometric match to HL_9H3G_037

Geometric discrepancy: 0.17

The information below is about HL_9H3G_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9H52|1|A|A|768
9H52|1|A|G|769
9H52|1|A|C|770
9H52|1|A|A|771
9H52|1|A|A|772
9H52|1|A|U|773

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain N

28S ribosomal protein S17, mitochondrial