HL_9H52_014

3D structure

PDB id

9H52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

9H52|1|A|A|1283, 9H52|1|A|U|1284

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H52_014 not in the Motif Atlas

Geometric match to HL_4XCO_003

Geometric discrepancy: 0.3949

The information below is about HL_4XCO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64374.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9H52|1|A|U|1281
9H52|1|A|G|1282
9H52|1|A|A|1283
9H52|1|A|U|1284
9H52|1|A|G|1285
9H52|1|A|A|1286
9H52|1|A|A|1287

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain B

28S ribosomal protein S2, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain S

28S ribosomal protein S23, mitochondrial