HL_9H52_016

3D structure

PDB id

9H52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGAAA

Length

6 nucleotides

Bulged bases

9H52|1|A|G|1581, 9H52|1|A|G|1582, 9H52|1|A|A|1584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H52_016 not in the Motif Atlas

Geometric match to HL_4Z31_001

Geometric discrepancy: 0.1849

The information below is about HL_4Z31_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9H52|1|A|U|1580
9H52|1|A|G|1581
9H52|1|A|G|1582
9H52|1|A|A|1583
9H52|1|A|A|1584
9H52|1|A|A|1585

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

Dimethyladenosine transferase 1, mitochondrial