HL_9H54_013

3D structure

PDB id

9H54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1 and partial RBFA (state N2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

9H54|1|A|C|1225

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H54_013 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.3372

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9H54|1|A|G|1217
9H54|1|A|A|1218
9H54|1|A|U|1219
9H54|1|A|A|1220
9H54|1|A|A|1221
9H54|1|A|A|1222
9H54|1|A|C|1223
9H54|1|A|C|1224
9H54|1|A|C|1225
9H54|1|A|C|1226

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain G

28S ribosomal protein S9, mitochondrial

Chain H

28S ribosomal protein S10, mitochondrial