9H54 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9H54_001 | 1/A/654:664 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_9H54_002 | 1/A/701:708 | No text annotation | ||
| HL_9H54_003 | 1/A/734:740 | No text annotation | ||
| HL_9H54_004 | 1/A/768:773 | No text annotation | geometric HL_8GLP_107 HL_34789.6 | |
| HL_9H54_005 | 1/A/792:796 | No text annotation | geometric HL_6U8D_003 HL_01957.1 | |
| HL_9H54_006 | 1/A/804:809 | No text annotation | ||
| HL_9H54_007 | 1/A/842:847 | GNRA | homologous HL_6CZR_081 NA | |
| HL_9H54_008 | 1/A/894:899 | GNRA variation | homologous HL_6CZR_216 NA | |
| HL_9H54_010 | 1/A/1023:1028 | GNRA | geometric HL_6SVS_001 HL_34789.6 | |
| HL_9H54_011 | 1/A/1115:1126 | No text annotation | ||
| HL_9H54_014 | 1/A/1281:1287 | No text annotation | geometric HL_9AXU_017 HL_37569.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9H54_009 | No text annotation | ||
| HL_9H54_012 | No text annotation | ||
| HL_9H54_013 | No text annotation | ||
| HL_9H54_015 | No text annotation | ||
| HL_9H54_016 | No text annotation | ||
| HL_9H54_017 | T-loop with 2 stacked bulged bases | ||
| HL_9H54_018 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9H54_001 | 1/A/649:651, 1/A/667:668 | No text annotation | ||
| IL_9H54_002 | 1/A/674:676, 1/A/921:923 | Isolated cWS basepair | geometric IL_5E81_401 IL_84227.1 | |
| IL_9H54_003 | 1/A/685:686, 1/A/859:861 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_9H54_004 | 1/A/690:692, 1/A/822:823 | No text annotation | geometric IL_9H3G_181 IL_14190.4 | |
| IL_9H54_005 | 1/A/694:696, 1/A/819:820 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_9H54_006 | 1/A/727:729, 1/A/744:747 | No text annotation | geometric IL_9DFE_030 IL_05502.2 | |
| IL_9H54_007 | 1/A/729:732, 1/A/742:744 | No text annotation | geometric IL_9DFE_030 IL_05502.2 | |
| IL_9H54_008 | 1/A/756:761, 1/A/779:786 | Kink-turn with non-sequential stacking | geometric IL_4LFB_011 IL_46174.6 | |
| IL_9H54_009 | 1/A/762:765, 1/A/777:778 | Major groove platform; stack outside cWW | geometric IL_3DIL_004 IL_74641.4 | |
| IL_9H54_010 | 1/A/762:766, 1/A/775:778 | No text annotation | ||
| IL_9H54_011 | 1/A/765:766, 1/A/775:777 | No text annotation | ||
| IL_9H54_012 | 1/A/830:832, 1/A/855:856 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_9H54_013 | 1/A/834:838, 1/A/852:853 | C-loop | homologous IL_6CZR_127 NA | |
| IL_9H54_014 | 1/A/838:839, 1/A/850:852 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_9H54_015 | 1/A/876:885, 1/A/910:913 | No text annotation | ||
| IL_9H54_016 | 1/A/887:893, 1/A/900:908 | Kink-turn related | homologous IL_6CZR_133 NA | |
| IL_9H54_017 | 1/A/935:941, 1/A/1133:1134 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_9H54_018 | 1/A/946:950, 1/A/1044:1049 | No text annotation | ||
| IL_9H54_023 | 1/A/1109:1111, 1/A/1130:1132 | Isolated non-canonical cWW pair | geometric IL_5CCB_001 IL_01003.6 | |
| IL_9H54_024 | 1/A/1139:1147, 1/A/1158:1164 | No text annotation | ||
| IL_9H54_025 | 1/A/1175:1176, 1/A/1477:1479 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_9H54_035 | 1/A/1274:1277, 1/A/1298:1301 | Double sheared | geometric IL_9H3G_241 IL_58355.4 | |
| IL_9H54_036 | 1/A/1278:1279, 1/A/1289:1297 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9H54_019 | No text annotation | ||
| IL_9H54_020 | Isolated non-canonical cWW pair | ||
| IL_9H54_021 | No text annotation | ||
| IL_9H54_022 | Other IL | ||
| IL_9H54_026 | Single bulged G | ||
| IL_9H54_027 | No text annotation | ||
| IL_9H54_028 | No text annotation | ||
| IL_9H54_029 | No text annotation | ||
| IL_9H54_030 | No text annotation | ||
| IL_9H54_031 | No text annotation | ||
| IL_9H54_032 | Minor groove platform | ||
| IL_9H54_033 | Single bulged U | ||
| IL_9H54_034 | Isolated non-canonical cWW pair | ||
| IL_9H54_037 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9H54_001 | 1/A/677:680, 1/A/866:872, 1/A/917:920 | No text annotation | ||
| J3_9H54_002 | 1/A/687:690, 1/A/823:830, 1/A/856:858 | No text annotation | ||
| J3_9H54_007 | 1/A/1268:1273, 1/A/1302:1308, 1/A/1317:1323 | No text annotation | ||
| J4_9H54_001 | 1/A/698:701, 1/A/708:715, 1/A/800:802, 1/A/811:817 | No text annotation | ||
| J4_9H54_002 | 1/A/717:724, 1/A/750:753, 1/A/789:791, 1/A/797:798 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9H54_003 | No text annotation | ||
| J3_9H54_004 | No text annotation | ||
| J3_9H54_005 | No text annotation | ||
| J3_9H54_006 | No text annotation |
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