HL_9H54_017

3D structure

PDB id

9H54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1 and partial RBFA (state N2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUGAAACUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H54_017 not in the Motif Atlas

Geometric match to HL_4WJ4_003

Geometric discrepancy: 0.1915

The information below is about HL_4WJ4_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9H54|1|A|A|1399
9H54|1|A|U|1400
9H54|1|A|G|1401
9H54|1|A|A|1402
9H54|1|A|A|1403
9H54|1|A|A|1404
9H54|1|A|C|1405
9H54|1|A|U|1406
9H54|1|A|U|1407

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain K

28S ribosomal protein S14, mitochondrial

Chain Z

28S ribosomal protein S33, mitochondrial