HL_9H55_012

3D structure

PDB id

9H55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1 and TFB1M (state N3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

9H55|1|A|C|1151, 9H55|1|A|C|1153, 9H55|1|A|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H55_012 not in the Motif Atlas

Geometric match to HL_7QQP_002

Geometric discrepancy: 0.1607

The information below is about HL_7QQP_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.5

Basepair signature

cWW-F

Number of instances in this motif group

42

Unit IDs

9H55|1|A|C|1150
9H55|1|A|C|1151
9H55|1|A|A|1152
9H55|1|A|C|1153
9H55|1|A|A|1154
9H55|1|A|G|1155

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

Dimethyladenosine transferase 1, mitochondrial

Chain 9

Nitric oxide-associated protein 1

Chain L

28S ribosomal protein S15, mitochondrial