HL_9H6I_007

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUUCUGG

Length

8 nucleotides

Bulged bases

9H6I|1|3|U|131, 9H6I|1|3|C|132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|3|C|128
9H6I|1|3|C|129
9H6I|1|3|U|130
9H6I|1|3|U|131
9H6I|1|3|C|132
9H6I|1|3|U|133
9H6I|1|3|G|134
9H6I|1|3|G|135

Current chains

Chain 3

Ribosomal RNA 5.8S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA