HL_9H6I_016

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

9H6I|1|A|G|301, 9H6I|1|A|U|302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|G|300
9H6I|1|A|G|301
9H6I|1|A|U|302
9H6I|1|A|A|303
9H6I|1|A|A|304
9H6I|1|A|A|305
9H6I|1|A|U|306
9H6I|1|A|U|307
9H6I|1|A|C|308
9H6I|1|A|C|309

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AG

Large ribosomal subunit protein eL13z

Chain AX

Large ribosomal subunit protein eL36y

Chain BD

Large ribosomal subunit protein eL42z/eL42y

Chain Ea

Large ribosomal subunit protein eL15z

Chain Ha

Large ribosomal subunit protein uL15x