HL_9H6I_029

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(A2M)CGUGCAAA(PSU)

Length

10 nucleotides

Bulged bases

9H6I|1|A|U|888, 9H6I|1|A|A|892, 9H6I|1|A|A|893

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|A2M|885
9H6I|1|A|C|886
9H6I|1|A|G|887
9H6I|1|A|U|888
9H6I|1|A|G|889
9H6I|1|A|C|890
9H6I|1|A|A|891
9H6I|1|A|A|892
9H6I|1|A|A|893
9H6I|1|A|PSU|894

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AY

Large ribosomal subunit protein eL37z

Chain BM

Large ribosomal subunit protein uL22z

Chain BS

Large ribosomal subunit protein uL3z

Chain L3

Nascent polypeptide