HL_9H6I_048

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CG(OMC)AUCA(OMG)

Length

8 nucleotides

Bulged bases

9H6I|1|A|OMC|1848, 9H6I|1|A|U|1850, 9H6I|1|A|A|1852

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|C|1846
9H6I|1|A|G|1847
9H6I|1|A|OMC|1848
9H6I|1|A|A|1849
9H6I|1|A|U|1850
9H6I|1|A|C|1851
9H6I|1|A|A|1852
9H6I|1|A|OMG|1853

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AY

Large ribosomal subunit protein eL37z

Chain BA

Large ribosomal subunit protein eL39z/eL39x

Chain BM

Large ribosomal subunit protein uL22z

Chain BT

Large ribosomal subunit protein uL4z

Chain L3

Nascent polypeptide