HL_9H6I_055

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9H6I|1|A|A2M|2254

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|G|2251
9H6I|1|A|PSU|2252
9H6I|1|A|A|2253
9H6I|1|A|A2M|2254
9H6I|1|A|C|2255
9H6I|1|A|PSU|2256
9H6I|1|A|A|2257
9H6I|1|A|PSU|2258
9H6I|1|A|G|2259
9H6I|1|A|A|2260
9H6I|1|A|C|2261

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain B1

Messenger RNA (poly-U)

Chain h1

Small subunit ribosomal RNA; SSU rRNA