HL_9H6I_057

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9H6I|1|A|A|2370, 9H6I|1|A|A|2371, 9H6I|1|A|C|2372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|G|2367
9H6I|1|A|G|2368
9H6I|1|A|G|2369
9H6I|1|A|A|2370
9H6I|1|A|A|2371
9H6I|1|A|C|2372
9H6I|1|A|G|2373
9H6I|1|A|G|2374
9H6I|1|A|G|2375
9H6I|1|A|C|2376

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AV

Large ribosomal subunit protein eL32z

Chain BH

Large ribosomal subunit protein uL13y

Chain BS

Large ribosomal subunit protein uL3z