HL_9H6I_071

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9H6I|1|A|G|3114, 9H6I|1|A|C|3118

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|C|3108
9H6I|1|A|PSU|3109
9H6I|1|A|G|3110
9H6I|1|A|A|3111
9H6I|1|A|A|3112
9H6I|1|A|C|3113
9H6I|1|A|G|3114
9H6I|1|A|C|3115
9H6I|1|A|C|3116
9H6I|1|A|U|3117
9H6I|1|A|C|3118
9H6I|1|A|U|3119
9H6I|1|A|A|3120
9H6I|1|A|A|3121
9H6I|1|A|G|3122

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain BH

Large ribosomal subunit protein uL13y

Chain Ga

Ubiquitin-ribosomal protein eL40z fusion protein

Chain Ia

Large ribosomal subunit protein uL6z/uL6y