HL_9H6I_080
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- ACUGAAGAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9H6I_080 not in the Motif Atlas
- Homologous match to HL_9MTS_102
- Geometric discrepancy: 0.1047
- The information below is about HL_9MTS_102
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9H6I|1|W2|A|31
9H6I|1|W2|C|32
9H6I|1|W2|U|33
9H6I|1|W2|G|34
9H6I|1|W2|A|35
9H6I|1|W2|A|36
9H6I|1|W2|G|37
9H6I|1|W2|A|38
9H6I|1|W2|U|39
Current chains
- Chain W2
- Transfer RNA Phe (GAA)
Nearby chains
- Chain AF
- Small ribosomal subunit protein uS9z
- Chain B1
- Messenger RNA (poly-U)
- Chain Ya
- Small ribosomal subunit protein uS19y
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
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