HL_9H6I_081

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H6I_081 not in the Motif Atlas

Homologous match to HL_4YYE_003

Geometric discrepancy: 0.073

The information below is about HL_4YYE_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9H6I|1|W2|G|53
9H6I|1|W2|U|54
9H6I|1|W2|U|55
9H6I|1|W2|C|56
9H6I|1|W2|G|57
9H6I|1|W2|A|58
9H6I|1|W2|U|59
9H6I|1|W2|C|60
9H6I|1|W2|C|61

Current chains

Chain W2

Transfer RNA Phe (GAA)

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA