HL_9H6I_089

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9H6I|1|h1|A|402, 9H6I|1|h1|C|404, 9H6I|1|h1|G|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|C|395
9H6I|1|h1|C|396
9H6I|1|h1|U|397
9H6I|1|h1|G|398
9H6I|1|h1|A|399
9H6I|1|h1|G|400
9H6I|1|h1|A|401
9H6I|1|h1|A|402
9H6I|1|h1|A|403
9H6I|1|h1|C|404
9H6I|1|h1|G|405
9H6I|1|h1|G|406

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Aa

Small ribosomal subunit protein eS8z

Chain Ja

Small ribosomal subunit protein eS4x

Chain Ka

Small ribosomal subunit protein eS24y

Chain Ta

Small ribosomal subunit protein eS6y