HL_9H6I_102

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAC(C4J)CAACAC

Length

10 nucleotides

Bulged bases

9H6I|1|h1|A|1197

QA status

Modified nucleotides: C4J

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|G|1189
9H6I|1|h1|A|1190
9H6I|1|h1|C|1191
9H6I|1|h1|C4J|1192
9H6I|1|h1|C|1193
9H6I|1|h1|A|1194
9H6I|1|h1|A|1195
9H6I|1|h1|C|1196
9H6I|1|h1|A|1197
9H6I|1|h1|C|1198

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain AF

Small ribosomal subunit protein uS9z

Chain Ba

Small ribosomal subunit protein uS10y

Chain Ca

Small ribosomal subunit protein uS14z/uS14y/uS14x

Chain W2

Transfer RNA; tRNA