HL_9H6Y_020

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|U|881
9H6Y|1|2|A|882
9H6Y|1|2|U|883
9H6Y|1|2|U|884
9H6Y|1|2|U|885
9H6Y|1|2|U|886
9H6Y|1|2|G|887
9H6Y|1|2|U|888
9H6Y|1|2|U|889
9H6Y|1|2|G|890
9H6Y|1|2|G|891
9H6Y|1|2|U|892
9H6Y|1|2|U|893
9H6Y|1|2|U|894
9H6Y|1|2|U|895
9H6Y|1|2|C|896
9H6Y|1|2|G|897

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS6

Chain N

Small ribosomal subunit protein uS17