HL_9H6Y_021
3D structure
- PDB id
- 9H6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9H6Y_021 not in the Motif Atlas
- Homologous match to HL_9PN5_095
- Geometric discrepancy: 0.1359
- The information below is about HL_9PN5_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9H6Y|1|2|A|953
9H6Y|1|2|G|954
9H6Y|1|2|G|955
9H6Y|1|2|U|956
9H6Y|1|2|G|957
9H6Y|1|2|A|958
9H6Y|1|2|A|959
9H6Y|1|2|A|960
9H6Y|1|2|U|961
9H6Y|1|2|U|962
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- Linear mRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain H
- Small ribosomal subunit protein uS7
- Chain Q
- Small ribosomal subunit protein uS11
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