HL_9H6Y_024

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

9H6Y|1|2|U|1111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H6Y_024 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.3945

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_56046.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9H6Y|1|2|A|1109
9H6Y|1|2|U|1110
9H6Y|1|2|U|1111
9H6Y|1|2|C|1112
9H6Y|1|2|C|1113
9H6Y|1|2|C|1114
9H6Y|1|2|A|1115
9H6Y|1|2|U|1116

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein eS1

Chain c

Small ribosomal subunit protein eS27