HL_9H6Y_025

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H6Y_025 not in the Motif Atlas

Homologous match to HL_9H3G_097

Geometric discrepancy: 0.0901

The information below is about HL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9H6Y|1|2|G|1137
9H6Y|1|2|G|1138
9H6Y|1|2|A|1139
9H6Y|1|2|A|1140
9H6Y|1|2|A|1141
9H6Y|1|2|C|1142

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain Y

Small ribosomal subunit protein uS8

Chain b

Small ribosomal subunit protein eS26