HL_9H74_028

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9H74|1|2|U|1296, 9H74|1|2|G|1298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H74_028 not in the Motif Atlas

Homologous match to HL_9H3G_100

Geometric discrepancy: 0.1887

The information below is about HL_9H3G_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9H74|1|2|A|1291
9H74|1|2|U|1292
9H74|1|2|U|1293
9H74|1|2|G|1294
9H74|1|2|A|1295
9H74|1|2|U|1296
9H74|1|2|A|1297
9H74|1|2|G|1298
9H74|1|2|C|1299
9H74|1|2|U|1300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein uS19

Chain e

40S ribosomal protein S29

Chain f

Ribosomal protein S27a