RNA 3D Hub //

9H74 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9H74_0021/1/31:39tRNA anticodon loop
homologous
HL_6CFJ_107
HL_81376.4
HL_9H74_0041/2/7:17No text annotation
homologous
HL_9PN5_077
HL_73535.3
HL_9H74_0051/2/69:80No text annotation
HL_9H74_0061/2/156:162No text annotation
homologous
HL_9PN5_079
HL_34789.6
HL_9H74_0081/2/279:286No text annotation
homologous
HL_9PN5_082
HL_67772.3
HL_9H74_0101/2/367:377No text annotation
geometric
HL_8GLP_091
HL_50525.1
HL_9H74_0111/2/406:411No text annotation
homologous
HL_9PN5_085
HL_34789.6
HL_9H74_0121/2/431:442No text annotation
homologous
HL_9PN5_086
HL_86432.3
HL_9H74_0131/2/452:457No text annotation
homologous
HL_9H3G_087
HL_61337.6
HL_9H74_0141/2/488:494No text annotation
homologous
HL_9PN5_088
HL_25795.1
HL_9H74_0161/2/559:571No text annotation
homologous
HL_9PN5_090
HL_68749.3
HL_9H74_0171/2/608:613No text annotation
homologous
HL_9PN5_091
HL_34789.6
HL_9H74_0181/2/816:824No text annotation
homologous
HL_9PN5_092
HL_11974.4
HL_9H74_0191/2/829:837No text annotation
HL_9H74_0211/2/953:962No text annotation
homologous
HL_9PN5_095
HL_38491.4
HL_9H74_0221/2/990:995No text annotation
homologous
HL_9PN5_096
HL_34789.6
HL_9H74_0231/2/1050:1060No text annotation
homologous
HL_9H3G_095
HL_38491.4
HL_9H74_0241/2/1109:1116tRNA anticodon loop
geometric
HL_8H1B_001
HL_56046.1
HL_9H74_0251/2/1137:1142No text annotation
homologous
HL_9H3G_097
HL_34789.6
HL_9H74_0261/2/1174:1179No text annotation
homologous
HL_9PN5_100
HL_34789.6
HL_9H74_0271/2/1241:1250No text annotation
homologous
HL_9PN5_101
HL_97521.3
HL_9H74_0281/2/1291:1300No text annotation
homologous
HL_9H3G_100
HL_98423.5
HL_9H74_0291/2/1349:1354No text annotation
homologous
HL_9H3G_101
HL_34789.6
HL_9H74_0301/2/1362:1369No text annotation
homologous
HL_9H3G_102
HL_63894.4
HL_9H74_0321/2/1456:1462No text annotation
geometric
HL_9AXU_017
HL_37569.4
HL_9H74_0331/2/1560:1565No text annotation
homologous
HL_9PN5_107
HL_34789.6
HL_9H74_0341/2/1609:1620No text annotation
homologous
HL_9PN5_108
HL_50951.3
HL_9H74_0351/2/1653:1661No text annotation
HL_9H74_0361/2/1841:1846No text annotation
homologous
HL_9PN5_111
HL_34789.6

Problematic loops

#loop idProblemSequence
HL_9H74_001No text annotation
HL_9H74_003T-loop with 2 stacked bulged bases
HL_9H74_007No text annotation
HL_9H74_009No text annotation
HL_9H74_015No text annotation
HL_9H74_020No text annotation
HL_9H74_031No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9H74_0011/2/23:25,
1/2/639:641		Isolated non-canonical cWW pair
geometric
IL_9H3G_007
IL_01003.6
IL_9H74_0021/2/34:36,
1/2/509:511		Isolated non-canonical cWW pair
homologous
IL_9PN5_143
IL_01003.6
IL_9H74_0031/2/37:40,
1/2/504:508		Double sheared
geometric
IL_8GLP_190
IL_58355.4
IL_9H74_0041/2/41:47,
1/2/469:471		No text annotation
geometric
IL_9PN5_145
IL_88082.4
IL_9H74_0051/2/49:51,
1/2/466:467		Minor groove platform
homologous
IL_9PN5_146
IL_41261.1
IL_9H74_0061/2/57:62,
1/2/86:88		No text annotation
homologous
IL_9PN5_147
IL_61299.8
IL_9H74_0071/2/63:68,
1/2/81:85		No text annotation
homologous
IL_9PN5_148
IL_21667.4
IL_9H74_0081/2/108:110,
1/2/341:343		Isolated non-canonical cWW pair
geometric
IL_1T0E_002
IL_71625.5
IL_9H74_0091/2/110:112,
1/2/339:341		Isolated non-canonical cWW pair
geometric
IL_8GLP_197
IL_01003.6
IL_9H74_0101/2/112:115,
1/2/338:339		No text annotation
homologous
IL_9H3G_163
IL_71421.5
IL_9H74_0111/2/116:121,
1/2/333:337		No text annotation
homologous
IL_9H3G_164
IL_31545.3
IL_9H74_0121/2/145:151,
1/2/167:174		No text annotation
homologous
IL_9H3G_165
IL_24485.3
IL_9H74_0131/2/152:154,
1/2/164:166		Isolated cWH basepair
homologous
IL_9PN5_153
IL_10892.4
IL_9H74_0141/2/187:191,
1/2/204:208		No text annotation
geometric
IL_8GLP_204
IL_87767.4
IL_9H74_0161/2/213:216,
1/2/293:300		No text annotation
IL_9H74_0171/2/303:305,
1/2/326:327		Single bulged A
homologous
IL_9PN5_156
IL_14190.4
IL_9H74_0181/2/308:311,
1/2/320:323		Tandem non-canonical cWW pairs
geometric
IL_8GLP_166
IL_15225.4
IL_9H74_0191/2/349:354,
1/2/386:393		Kink-turn with non-sequential stacking
homologous
IL_9PN5_159
IL_46174.6
IL_9H74_0201/2/356:361,
1/2/383:384		No text annotation
geometric
IL_8GLP_211
IL_01372.3
IL_9H74_0211/2/401:403,
1/2/414:419		No text annotation
homologous
IL_9H3G_175
IL_93336.3
IL_9H74_0221/2/427:429,
1/2/444:446		Isolated cWH basepair
homologous
IL_9PN5_162
IL_10892.4
IL_9H74_0231/2/449:451,
1/2/458:460		Isolated non-canonical cWW pair
homologous
IL_9PN5_163
IL_01003.6
IL_9H74_0241/2/477:479,
1/2/501:502		Single bulged U
homologous
IL_9PN5_164
IL_97561.7
IL_9H74_0251/2/481:485,
1/2/498:499		No text annotation
homologous
IL_9PN5_165
IL_26900.3
IL_9H74_0261/2/485:486,
1/2/496:498		Single bulged G
homologous
IL_9PN5_166
IL_28408.4
IL_9H74_0271/2/518:521,
1/2/543:547		No text annotation
IL_9H74_0281/2/522:524,
1/2/539:542		No text annotation
geometric
IL_9M86_006
IL_32983.3
IL_9H74_0301/2/553:555,
1/2/575:582		No text annotation
IL_9H74_0311/2/556:559,
1/2/571:574		Tandem non-canonical cWW pairs
geometric
IL_8GLP_220
IL_71194.4
IL_9H74_0321/2/589:596,
1/2/626:627		No text annotation
homologous
IL_9PN5_171
IL_11411.3
IL_9H74_0331/2/596:598,
1/2/625:626		Single bulged U
homologous
IL_9H3G_186
IL_97561.7
IL_9H74_0341/2/601:607,
1/2/614:622		Kink-turn related
homologous
IL_9H3G_187
IL_52042.3
IL_9H74_0351/2/653:655,
1/2/1158:1160		Isolated non-canonical cWW pair
homologous
IL_9H3G_188
IL_01003.6
IL_9H74_0361/2/655:661,
1/2/1157:1158		No text annotation
homologous
IL_9PN5_174
IL_20847.3
IL_9H74_0371/2/663:665,
1/2/1026:1028		Isolated non-canonical cWW pair
homologous
IL_9PN5_175
IL_01003.6
IL_9H74_0381/2/666:670,
1/2/1021:1025		No text annotation
homologous
IL_9PN5_176
IL_05821.3
IL_9H74_0401/2/798:799,
1/2/856:859		No text annotation
homologous
IL_9H3G_192
IL_73108.4
IL_9H74_0411/2/801:803,
1/2/852:854		Isolated non-canonical cWW pair
homologous
IL_9H3G_193
IL_71625.5
IL_9H74_0421/2/803:811,
1/2/845:852		No text annotation
homologous
IL_9H3G_194
IL_59049.4
IL_9H74_0431/2/870:872,
1/2/906:907		Single stack bend
geometric
IL_8OI5_012
IL_15011.5
IL_9H74_0441/2/872:875,
1/2/903:906		No text annotation
geometric
IL_9AXU_077
IL_16315.2
IL_9H74_0451/2/918:919,
1/2/1015:1018		Major groove platform; stack outside cWW
geometric
IL_9PN5_182
IL_74641.4
IL_9H74_0461/2/921:923,
1/2/1010:1013		Isolated non-canonical cWW pair
homologous
IL_9PN5_183
IL_01003.6
IL_9H74_0471/2/924:927,
1/2/1006:1009		Tandem non-canonical cWW pairs
homologous
IL_9PN5_184
IL_15225.4
IL_9H74_0481/2/927:931,
1/2/1003:1006		Tandem non-canonical cWW pairs
homologous
IL_9PN5_185
IL_15225.4
IL_9H74_0491/2/938:941,
1/2/977:980		Tandem non-canonical cWW pairs
homologous
IL_9PN5_186
IL_15225.4
IL_9H74_0501/2/948:952,
1/2/963:970		Kink-turn
homologous
IL_9H3G_202
IL_71972.2
IL_9H74_0511/2/1038:1043,
1/2/1067:1069		No text annotation
homologous
IL_9PN5_189
IL_31690.1
IL_9H74_0521/2/1043:1047,
1/2/1063:1067		No text annotation
homologous
IL_9PN5_190
IL_05821.3
IL_9H74_0531/2/1087:1089,
1/2/1148:1154		No text annotation
homologous
IL_9H3G_205
IL_82706.4
IL_9H74_0541/2/1094:1097,
1/2/1127:1130		Tandem non-canonical cWW pairs
homologous
IL_9PN5_192
IL_15225.4
IL_9H74_0551/2/1097:1099,
1/2/1125:1127		Isolated non-canonical cWW pair
geometric
IL_3CUL_008
IL_01003.6
IL_9H74_0561/2/1104:1106,
1/2/1119:1120		Single bulged C
geometric
IL_9E6Q_038
IL_05642.5
IL_9H74_0571/2/1164:1171,
1/2/1182:1187		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_9PN5_194
IL_84044.3
IL_9H74_0581/2/1199:1200,
1/2/1689:1691		Single bulged A
homologous
IL_9H3G_210
IL_14190.4
IL_9H74_0591/2/1202:1204,
1/2/1686:1687		Single bulged G
homologous
IL_9PN5_196
IL_28408.4
IL_9H74_0601/2/1210:1213,
1/2/1676:1680		No text annotation
homologous
IL_9H3G_212
IL_63596.14
IL_9H74_0611/2/1226:1228,
1/2/1521:1523		Isolated non-canonical cWW pair
homologous
IL_9H3G_213
IL_01003.6
IL_9H74_0621/2/1231:1232,
1/2/1516:1518		Minor groove platform
homologous
IL_9H3G_214
IL_98469.1
IL_9H74_0631/2/1266:1268,
1/2/1506:1507		Isolated non-canonical cWW pair
geometric
IL_2GUN_002
IL_53541.1
IL_9H74_0641/2/1277:1283,
1/2/1310:1312		No text annotation
IL_9H74_0651/2/1277:1286,
1/2/1305:1312		No text annotation
IL_9H74_0661/2/1283:1286,
1/2/1305:1310		No text annotation
IL_9H74_0671/2/1287:1289,
1/2/1302:1304		No text annotation
homologous
IL_9H3G_217
IL_75737.1
IL_9H74_0681/2/1321:1323,
1/2/1498:1499		Single bulged U
homologous
IL_9PN5_203
IL_97561.7
IL_9H74_0691/2/1325:1329,
1/2/1494:1496		No text annotation
geometric
IL_9PN5_204
IL_82453.3
IL_9H74_0701/2/1325:1331,
1/2/1488:1496		No text annotation
IL_9H74_0711/2/1329:1331,
1/2/1488:1494		No text annotation
homologous
IL_9H3G_221
IL_09439.2
IL_9H74_0721/2/1333:1334,
1/2/1484:1486		Single bulged A
homologous
IL_9H3G_222
IL_14190.4
IL_9H74_0731/2/1343:1345,
1/2/1376:1378		Isolated cWH basepair
homologous
IL_9PN5_210
IL_10892.4
IL_9H74_0741/2/1359:1361,
1/2/1370:1371		Minor groove platform
homologous
IL_9H3G_224
IL_41261.1
IL_9H74_0751/2/1391:1395,
1/2/1443:1446		No text annotation
geometric
IL_8GLP_337
IL_37443.2
IL_9H74_0761/2/1398:1401,
1/2/1437:1440		No text annotation
homologous
IL_9H3G_226
IL_78800.4
IL_9H74_0771/2/1404:1407,
1/2/1431:1434		No text annotation
geometric
IL_9UJU_004
IL_32983.3
IL_9H74_0781/2/1407:1409,
1/2/1429:1431		Isolated non-canonical cWW pair
geometric
IL_8GLP_030
IL_01003.6
IL_9H74_0791/2/1409:1412,
1/2/1425:1429		No text annotation
geometric
IL_1CSL_001
IL_37443.2
IL_9H74_0801/2/1413:1416,
1/2/1423:1424		Major groove platform
geometric
IL_4WF9_026
IL_48076.10
IL_9H74_0811/2/1532:1534,
1/2/1589:1591		Isolated non-canonical cWW pair
geometric
IL_3SZX_002
IL_71625.5
IL_9H74_0821/2/1536:1545,
1/2/1577:1587		No text annotation
IL_9H74_0831/2/1545:1553,
1/2/1572:1577		No text annotation
IL_9H74_0841/2/1555:1557,
1/2/1568:1570		No text annotation
homologous
IL_9H3G_231
IL_01334.1
IL_9H74_0851/2/1599:1605,
1/2/1624:1630		No text annotation
IL_9H74_0861/2/1695:1697,
1/2/1827:1830		No text annotation
homologous
IL_9H3G_233
IL_18228.3
IL_9H74_0871/2/1697:1700,
1/2/1823:1827		No text annotation
homologous
IL_9PN5_221
IL_25873.4
IL_9H74_0881/2/1701:1703,
1/2/1820:1822		Isolated non-canonical cWW pair
homologous
IL_9H3G_235
IL_01003.6
IL_9H74_0891/2/1703:1707,
1/2/1815:1820		No text annotation
IL_9H74_0901/2/1709:1711,
1/2/1811:1813		Isolated non-canonical cWW pair
homologous
IL_9PN5_224
IL_01003.6
IL_9H74_0911/2/1712:1715,
1/2/1807:1810		Double sheared
homologous
IL_9H3G_238
IL_58355.4
IL_9H74_0921/2/1715:1717,
1/2/1806:1807		Single bulged U
homologous
IL_9H3G_239
IL_97561.7
IL_9H74_0931/2/1724:1726,
1/2/1797:1799		No text annotation
homologous
IL_9PN5_227
IL_55553.3
IL_9H74_0941/2/1728:1731,
1/2/1792:1795		Double sheared
homologous
IL_9H3G_241
IL_58355.4
IL_9H74_0951/2/1734:1736,
1/2/1787:1789		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_01003.6
IL_9H74_0961/2/1737:1741,
1/2/1782:1786		No text annotation
homologous
IL_9PN5_231
IL_15190.4
IL_9H74_0971/2/1745:1746,
1/2/1776:1778		No text annotation

Problematic loops

#loop idProblemSequence
IL_9H74_015Isolated non-canonical cWW pair
IL_9H74_029Isolated non-canonical cWW pair
IL_9H74_039No text annotation
IL_9H74_098Single stack bend
IL_9H74_099Single stack bend
IL_9H74_100Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9H74_0011/2/40:41,
1/2/471:477,
1/2/502:504		No text annotation
geometric
J3_9PN5_027
J3_58657.3
J3_9H74_0021/2/40:47,
1/2/469:477,
1/2/502:504		No text annotation
homologous
J3_9PN5_028
J3_63856.3
J3_9H74_0031/2/220:235,
1/2/274:279,
1/2/286:289		No text annotation
J3_9H74_0041/2/672:675,
1/2/913:918,
1/2/1018:1019		No text annotation
J3_9H74_0051/2/672:675,
1/2/913:919,
1/2/1015:1019		No text annotation
J3_9H74_0061/2/812:815,
1/2/825:827,
1/2/839:844		No text annotation
homologous
J3_9H3G_032
J3_97642.4
J3_9H74_0071/2/934:937,
1/2/981:989,
1/2/996:1000		No text annotation
homologous
J3_9PN5_033
NA
J3_9H74_0081/2/1090:1092,
1/2/1132:1136,
1/2/1143:1147		No text annotation
J3_9H74_0091/2/1214:1217,
1/2/1640:1646,
1/2/1668:1675		No text annotation
homologous
J3_9PN5_035
J3_85722.3
J3_9H74_0101/2/1221:1224,
1/2/1525:1527,
1/2/1633:1636		No text annotation
homologous
J3_9PN5_036
J3_44359.3
J3_9H74_0111/2/1233:1240,
1/2/1251:1262,
1/2/1511:1515		No text annotation
homologous
J3_9PN5_037
J3_88451.3
J3_9H74_0121/2/1268:1273,
1/2/1316:1320,
1/2/1500:1506		No text annotation
homologous
J3_9H3G_038
J3_87797.4
J3_9H74_0131/2/1336:1341,
1/2/1380:1385,
1/2/1477:1482		No text annotation
homologous
J3_9H3G_039
NA
J3_9H74_0141/2/1346:1347,
1/2/1356:1359,
1/2/1371:1375		No text annotation
homologous
J3_9PN5_040
J3_76043.6
J3_9H74_0151/2/1387:1391,
1/2/1446:1452,
1/2/1466:1475		No text annotation
J3_9H74_0161/2/1527:1531,
1/2/1592:1599,
1/2/1630:1633		No text annotation
homologous
J3_9PN5_043
J3_03192.3
J4_9H74_0011/1/8:14,
1/1/22:27,
1/1/43:49,
1/1/65:66		No text annotation
J4_9H74_0021/2/98:106,
1/2/345:347,
1/2/395:399,
1/2/421:422		No text annotation
homologous
J4_9H3G_013
J4_15241.4
J4_9H74_0031/2/661:663,
1/2/1028:1033,
1/2/1074:1085,
1/2/1156:1157		No text annotation
homologous
J4_9PN5_011
J4_14595.3
J5_9H74_0011/2/30:34,
1/2/511:517,
1/2/548:553,
1/2/582:585,
1/2/631:634		No text annotation
homologous
J5_9PN5_007
J5_04786.3
J5_9H74_0021/2/30:34,
1/2/511:517,
1/2/548:555,
1/2/575:585,
1/2/631:634		No text annotation
J5_9H74_0031/2/53:56,
1/2/89:96,
1/2/424:426,
1/2/447:449,
1/2/460:464		No text annotation
homologous
J5_9PN5_009
J5_58574.3
J5_9H74_0041/2/675:680,
1/2/734:740,
1/2/793:796,
1/2/861:869,
1/2/908:913		No text annotation

Problematic loops

No problematic loops


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