HL_9H74_032

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

9H74|1|2|U|1458, 9H74|1|2|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H74_032 not in the Motif Atlas

Geometric match to HL_9AXU_017

Geometric discrepancy: 0.3104

The information below is about HL_9AXU_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9H74|1|2|C|1456
9H74|1|2|G|1457
9H74|1|2|U|1458
9H74|1|2|U|1459
9H74|1|2|C|1460
9H74|1|2|A|1461
9H74|1|2|G|1462

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein eS17

Chain g

Small ribosomal subunit protein RACK1

Chain m

Eukaryotic translation initiation factor 3 subunit D