HL_9H8G_007

3D structure

PDB id

9H8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 5 30S-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H8G_007 not in the Motif Atlas

Geometric match to HL_5J7L_007

Geometric discrepancy: 0.0538

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9H8G|1|A|U|296
9H8G|1|A|G|297
9H8G|1|A|A|298
9H8G|1|A|G|299
9H8G|1|A|A|300
9H8G|1|A|G|301

Current chains

Chain A

16S rRNA fragment (1078-MER)

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17