HL_9H8G_011

3D structure

PDB id

9H8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 5 30S-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9H8G|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H8G_011 not in the Motif Atlas

Geometric match to HL_1I6U_001

Geometric discrepancy: 0.0958

The information below is about HL_1I6U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

9H8G|1|A|C|419
9H8G|1|A|U|420
9H8G|1|A|U|421
9H8G|1|A|C|422
9H8G|1|A|G|423
9H8G|1|A|G|424

Current chains

Chain A

16S rRNA fragment (1078-MER)

Nearby chains

Chain D

Small ribosomal subunit protein uS4