HL_9H8G_015

3D structure

PDB id

9H8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 5 30S-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H8G_015 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.0912

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9H8G|1|A|C|689
9H8G|1|A|G|690
9H8G|1|A|G|691
9H8G|1|A|U|692
9H8G|1|A|G|693
9H8G|1|A|A|694
9H8G|1|A|A|695
9H8G|1|A|A|696
9H8G|1|A|U|697
9H8G|1|A|G|698

Current chains

Chain A

16S rRNA fragment (1078-MER)

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain U

Small ribosomal subunit protein bS21