HL_9H9H_001

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGUCGGUUAG

Length

11 nucleotides

Bulged bases

9H9H|1|3|U|15, 9H9H|1|3|C|16, 9H9H|1|3|G|17, 9H9H|1|3|G|18, 9H9H|1|3|U|19, 9H9H|1|3|U|20, 9H9H|1|3|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9H_001 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.2976

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

9H9H|1|3|C|12
9H9H|1|3|A|13
9H9H|1|3|G|14
9H9H|1|3|U|15
9H9H|1|3|C|16
9H9H|1|3|G|17
9H9H|1|3|G|18
9H9H|1|3|U|19
9H9H|1|3|U|20
9H9H|1|3|A|21
9H9H|1|3|G|22

Current chains

Chain 3

t-RNA (77-MER)

Nearby chains

Chain Z

Translation initiation factor IF-3