HL_9H9H_018

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9H_018 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.1548

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9H9H|1|A|C|689
9H9H|1|A|G|690
9H9H|1|A|G|691
9H9H|1|A|U|692
9H9H|1|A|G|693
9H9H|1|A|A|694
9H9H|1|A|A|695
9H9H|1|A|A|696
9H9H|1|A|U|697
9H9H|1|A|G|698

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain 2

mRNA (5'-R(P*AP*AP*UP*G)-3')

Chain K

Small ribosomal subunit protein uS11

Chain Z

Translation initiation factor IF-3