HL_9H9J_008

3D structure

PDB id

9H9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9J_008 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.1029

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9H9J|1|A|A|320
9H9J|1|A|A|321
9H9J|1|A|C|322
9H9J|1|A|U|323
9H9J|1|A|G|324
9H9J|1|A|A|325
9H9J|1|A|G|326
9H9J|1|A|A|327
9H9J|1|A|C|328
9H9J|1|A|A|329
9H9J|1|A|C|330
9H9J|1|A|G|331
9H9J|1|A|G|332
9H9J|1|A|U|333

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20