3D structure

PDB id
9H9M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
9H9M|1|1|U|1030
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9H9M_003 not in the Motif Atlas
Geometric match to HL_6QN3_003
Geometric discrepancy: 0.2701
The information below is about HL_6QN3_003
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

9H9M|1|1|C|1028
9H9M|1|1|U|1029
9H9M|1|1|U|1030
9H9M|1|1|C|1031
9H9M|1|1|G|1032
9H9M|1|1|G|1033

Current chains

Chain 1
16S RNA (1542-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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