Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9H9M_0011/1/963:972No text annotation
geometric
HL_4LFB_021
HL_97521.1
HL_9H9M_0021/1/1012:1017GNRA
geometric
HL_4Y1M_004
HL_34789.1
HL_9H9M_0041/1/1076:1081GNRA
geometric
HL_8P9A_147
HL_34789.1
HL_9H9M_0051/1/1089:1096T-loop related
geometric
HL_4LFB_025
HL_63894.1
HL_9H9M_0061/1/1134:1140UNCG variation
geometric
HL_6DME_002
HL_61337.1
HL_9H9M_0071/1/1165:1171GNRA
geometric
HL_4LFB_022
HL_34789.1
HL_9H9M_0081/1/1265:1270GNRA
geometric
HL_4LFB_024
HL_34789.1
HL_9H9M_0091/1/1314:1323T-loop with 3 stacked bulged bases
geometric
HL_4LFB_029
HL_93658.1
HL_9H9M_0101/1/1356:1366No text annotation
geometric
HL_5J7L_029
NA

Problematic loops

#loop idProblemSequence
HL_9H9M_003UNCG

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9H9M_0011/1/933:935,
1/1/1380:1384
Minor groove platform
geometric
IL_5J7L_041
NA
IL_9H9M_0021/1/953:954,
1/1/1226:1228
Minor groove platform
geometric
IL_5J7L_042
NA
IL_9H9M_0031/1/993:997,
1/1/1044:1045
Minor groove platform
geometric
IL_5J7L_043
NA
IL_9H9M_0041/1/998:999,
1/1/1041:1043
Single stack bend
geometric
IL_7A0S_054
IL_15011.1
IL_9H9M_0051/1/1048:1050,
1/1/1208:1209
Single bulged U
geometric
IL_5J7L_046
NA
IL_9H9M_0061/1/1052:1056,
1/1/1204:1206
Isolated cWS basepair
geometric
IL_4LFB_044
IL_82453.1
IL_9H9M_0071/1/1057:1058,
1/1/1199:1203
Minor groove platform
geometric
IL_5J7L_048
NA
IL_9H9M_0081/1/1060:1061,
1/1/1195:1197
Single bulged A
geometric
IL_5J7L_049
NA
IL_9H9M_0091/1/1061:1063,
1/1/1193:1195
Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_9H9M_0101/1/1124:1128,
1/1/1144:1149
No text annotation
geometric
IL_5J7L_051
NA
IL_9H9M_0111/1/1129:1132,
1/1/1142:1143
Minor groove platform
geometric
IL_3MXH_005
IL_87975.1
IL_9H9M_0121/1/1158:1161,
1/1/1175:1181
No text annotation
geometric
IL_5J7L_053
NA
IL_9H9M_0131/1/1247:1253,
1/1/1284:1290
No text annotation
geometric
IL_5J7L_054
NA
IL_9H9M_0141/1/1255:1258,
1/1/1277:1282
180 degree turn
geometric
IL_5J7L_055
NA
IL_9H9M_0151/1/1259:1263,
1/1/1272:1276
Double sheared with non-canonical cWW
geometric
IL_5J7L_056
NA
IL_9H9M_0161/1/1303:1308,
1/1/1329:1334
No text annotation
geometric
IL_5J7L_057
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9H9M_0011/1/936:939,
1/1/1344:1350,
1/1/1372:1379
No text annotation
geometric
J3_4LFB_002
J3_85722.1
J3_9H9M_0021/1/943:946,
1/1/1235:1237,
1/1/1337:1340
No text annotation
geometric
J3_4LFB_003
J3_44359.1
J3_9H9M_0031/1/955:962,
1/1/973:984,
1/1/1221:1225
No text annotation
geometric
J3_4LFB_004
J3_88451.1
J3_9H9M_0041/1/990:993,
1/1/1045:1047,
1/1/1210:1215
No text annotation
J3_9H9M_0051/1/990:997,
1/1/1044:1047,
1/1/1210:1215
No text annotation
J3_9H9M_0061/1/1003:1007,
1/1/1022:1027,
1/1/1034:1037
No text annotation
J3_9H9M_0071/1/1063:1068,
1/1/1107:1113,
1/1/1187:1193
No text annotation
geometric
J3_4LFB_007
J3_01343.1
J3_9H9M_0081/1/1073:1074,
1/1/1083:1086,
1/1/1099:1102
No text annotation
geometric
J3_4LFB_017
J3_11018.1
J3_9H9M_0091/1/1116:1118,
1/1/1155:1158,
1/1/1181:1184
No text annotation
geometric
J3_5J7L_010
NA
J3_9H9M_0101/1/1116:1118,
1/1/1155:1161,
1/1/1175:1184
No text annotation
geometric
J3_5J7L_054
NA
J3_9H9M_0111/1/1237:1241,
1/1/1296:1303,
1/1/1334:1337
No text annotation
geometric
J3_4LFB_009
J3_03192.1

Problematic loops

No problematic loops


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