HL_9H9M_004

3D structure

PDB id

9H9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9M_004 not in the Motif Atlas

Geometric match to HL_8P9A_147

Geometric discrepancy: 0.1491

The information below is about HL_8P9A_147

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9H9M|1|1|U|1076
9H9M|1|1|G|1077
9H9M|1|1|U|1078
9H9M|1|1|G|1079
9H9M|1|1|A|1080
9H9M|1|1|A|1081

Current chains

Chain 1

16S RNA (1542-MER)

Nearby chains

Chain B

Small ribosomal subunit protein uS2