HL_9H9M_007

3D structure

PDB id

9H9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9H9M|1|1|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9M_007 not in the Motif Atlas

Geometric match to HL_4LFB_022

Geometric discrepancy: 0.1983

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9H9M|1|1|U|1165
9H9M|1|1|G|1166
9H9M|1|1|A|1167
9H9M|1|1|U|1168
9H9M|1|1|A|1169
9H9M|1|1|A|1170
9H9M|1|1|A|1171

Current chains

Chain 1

16S RNA (1542-MER)

Nearby chains

Chain B

Small ribosomal subunit protein uS2