3D structure

PDB id
9H9M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGCGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9H9M_008 not in the Motif Atlas
Geometric match to HL_4LFB_024
Geometric discrepancy: 0.0988
The information below is about HL_4LFB_024
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

9H9M|1|1|C|1265
9H9M|1|1|G|1266
9H9M|1|1|C|1267
9H9M|1|1|G|1268
9H9M|1|1|A|1269
9H9M|1|1|G|1270

Current chains

Chain 1
16S RNA (1542-MER)

Nearby chains

Chain M
Small ribosomal subunit protein uS13
Chain S
Small ribosomal subunit protein uS19

Coloring options:


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