HL_9H9M_008

3D structure

PDB id

9H9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9M_008 not in the Motif Atlas

Geometric match to HL_4LFB_024

Geometric discrepancy: 0.0988

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9H9M|1|1|C|1265
9H9M|1|1|G|1266
9H9M|1|1|C|1267
9H9M|1|1|G|1268
9H9M|1|1|A|1269
9H9M|1|1|G|1270

Current chains

Chain 1

16S RNA (1542-MER)

Nearby chains

Chain M

Small ribosomal subunit protein uS13

Chain S

Small ribosomal subunit protein uS19