HL_9H9M_008
3D structure
- PDB id
- 9H9M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9H9M_008 not in the Motif Atlas
- Geometric match to HL_4LFB_024
- Geometric discrepancy: 0.0988
- The information below is about HL_4LFB_024
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
9H9M|1|1|C|1265
9H9M|1|1|G|1266
9H9M|1|1|C|1267
9H9M|1|1|G|1268
9H9M|1|1|A|1269
9H9M|1|1|G|1270
Current chains
- Chain 1
- 16S RNA (1542-MER)
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13
- Chain S
- Small ribosomal subunit protein uS19
Coloring options: