HL_9H9N_006

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9H9N|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9N_006 not in the Motif Atlas

Geometric match to HL_5J7L_006

Geometric discrepancy: 0.0994

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9H9N|1|A|G|259
9H9N|1|A|G|260
9H9N|1|A|U|261
9H9N|1|A|A|262
9H9N|1|A|A|263
9H9N|1|A|C|264
9H9N|1|A|G|265
9H9N|1|A|G|266
9H9N|1|A|C|267

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20