HL_9H9N_007

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9N_007 not in the Motif Atlas

Geometric match to HL_5J7L_007

Geometric discrepancy: 0.1047

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9H9N|1|A|U|296
9H9N|1|A|G|297
9H9N|1|A|A|298
9H9N|1|A|G|299
9H9N|1|A|A|300
9H9N|1|A|G|301

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain Q

Small ribosomal subunit protein uS17