HL_9HA1_011

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9HA1|1|A|G|329, 9HA1|1|A|A|330, 9HA1|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA1_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1601

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9HA1|1|A|G|327
9HA1|1|A|U|328
9HA1|1|A|G|329
9HA1|1|A|A|330
9HA1|1|A|C|331
9HA1|1|A|A|332
9HA1|1|A|G|333
9HA1|1|A|C|334
9HA1|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24