HL_9HA1_020

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

9HA1|1|A|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA1_020 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.5084

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9HA1|1|A|U|641
9HA1|1|A|U|642
9HA1|1|A|A|643
9HA1|1|A|A|644
9HA1|1|A|C|645
9HA1|1|A|U|646
9HA1|1|A|G|647

Current chains

Chain A

23S ribosomal RNA

Nearby chains