HL_9HA1_030

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9HA1|1|A|G|1452, 9HA1|1|A|A|1453, 9HA1|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA1_030 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.206

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9HA1|1|A|C|1451
9HA1|1|A|G|1452
9HA1|1|A|A|1453
9HA1|1|A|C|1454
9HA1|1|A|G|1455
9HA1|1|A|G|1456
9HA1|1|A|U|1457
9HA1|1|A|U|1458
9HA1|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17