HL_9HA2_034

3D structure

PDB id

9HA2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Alternative PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9HA2|1|A|A|1616, 9HA2|1|A|A|1618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA2_034 not in the Motif Atlas

Homologous match to HL_9DFE_038

Geometric discrepancy: 0.411

The information below is about HL_9DFE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9HA2|1|A|C|1612
9HA2|1|A|G|1613
9HA2|1|A|A|1614
9HA2|1|A|C|1615
9HA2|1|A|A|1616
9HA2|1|A|C|1617
9HA2|1|A|A|1618
9HA2|1|A|G|1619

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34