HL_9HA3_016

3D structure

PDB id

9HA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.62 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9HA3|1|A|U|546, 9HA3|1|A|A|547, 9HA3|1|A|G|548, 9HA3|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA3_016 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1458

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

9HA3|1|A|G|543
9HA3|1|A|C|544
9HA3|1|A|U|545
9HA3|1|A|U|546
9HA3|1|A|A|547
9HA3|1|A|G|548
9HA3|1|A|G|549
9HA3|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL21