HL_9HA4_004

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

9HA4|1|A|U|138, 9HA4|1|A|U|139, 9HA4|1|A|C|140, 9HA4|1|A|G|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA4_004 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.204

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9HA4|1|A|G|136
9HA4|1|A|U|137
9HA4|1|A|U|138
9HA4|1|A|U|139
9HA4|1|A|C|140
9HA4|1|A|G|141
9HA4|1|A|A|142
9HA4|1|A|C|143

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23