Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9HA4_0011/A/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_9HA4_0111/A/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_9HA4_0231/A/978:985No text annotation
homologous
HL_9DFE_026
HL_47171.1
HL_9HA4_0281/A/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_9HA4_0381/A/2027:2036No text annotation
homologous
HL_5J7L_183
NA

Problematic loops

#loop idProblemSequence
HL_9HA4_002No text annotation
HL_9HA4_003No text annotation
HL_9HA4_004No text annotation
HL_9HA4_005No text annotation
HL_9HA4_006No text annotation
HL_9HA4_007No text annotation
HL_9HA4_008No text annotation
HL_9HA4_009T-loop with 2 stacked bulged bases
HL_9HA4_010No text annotation
HL_9HA4_012No text annotation
HL_9HA4_013Pseudoknot geometry
HL_9HA4_014GNRA
HL_9HA4_015GNRA
HL_9HA4_016No text annotation
HL_9HA4_017T-loop with 2 stacked bulged bases
HL_9HA4_018No text annotation
HL_9HA4_019No text annotation
HL_9HA4_020GNRA
HL_9HA4_021No text annotation
HL_9HA4_022GNRA
HL_9HA4_024Externally structured
HL_9HA4_025GNRA
HL_9HA4_026T-loop with 2 stacked bulged bases
HL_9HA4_027Pseudoknot geometry with 3' bulge
HL_9HA4_029No text annotation
HL_9HA4_030Mini UNCG with extended bulge
HL_9HA4_031Pseudoknot geometry with 3' bulge
HL_9HA4_032UNCG
HL_9HA4_033Mini UNCG
HL_9HA4_034No text annotation
HL_9HA4_035GNRA
HL_9HA4_036Mini UNCG
HL_9HA4_037No text annotation
HL_9HA4_039No text annotation
HL_9HA4_040No text annotation
HL_9HA4_041Pseudoknot geometry
HL_9HA4_042GNRA
HL_9HA4_043GNRA
HL_9HA4_044No text annotation
HL_9HA4_045GNRA
HL_9HA4_046No text annotation
HL_9HA4_047No text annotation
HL_9HA4_048Mini UNCG
HL_9HA4_049No text annotation
HL_9HA4_050GNRA
HL_9HA4_051No text annotation
HL_9HA4_052Mini UNCG

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9HA4_0101/A/293:295,
1/A/343:347
No text annotation
homologous
IL_5J7L_254
NA
IL_9HA4_0201/A/844:848,
1/A/930:934
No text annotation
homologous
IL_5J7L_399
NA
IL_9HA4_0211/A/847:848,
1/A/930:933
Stack outside cWW
homologous
IL_5J7L_268
NA
IL_9HA4_0251/A/994:996,
1/A/1159:1160
Single bulged C
homologous
IL_5J7L_276
NA
IL_9HA4_0271/A/1004:1011,
1/A/1150:1151
SSU/LSU pseudoknot
homologous
IL_4WF9_037
IL_11411.1
IL_9HA4_0301/A/1196:1198,
1/A/1247:1250
Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.5
IL_9HA4_0581/A/2680:2684,
1/A/2725:2727
C-loop
homologous
IL_5J7L_347
NA
IL_9HA4_0591/A/2687:2691,
1/A/2718:2722
UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_9HA4_0651/A/2843:2846,
1/A/2870:2874
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA

Problematic loops

#loop idProblemSequence
IL_9HA4_001Triple sheared with non-canonical cWW
IL_9HA4_002Single bulged A
IL_9HA4_003Minor groove platform
IL_9HA4_004No text annotation
IL_9HA4_005Single stack bend
IL_9HA4_0068x7 Sarcin-Ricin; G-bulge
IL_9HA4_0077x6 Sarcin-Ricin; G-bulge
IL_9HA4_008No text annotation
IL_9HA4_009No text annotation
IL_9HA4_011Single stack bend
IL_9HA4_012No text annotation
IL_9HA4_013Double sheared
IL_9HA4_014Isolated non-canonical cWW pair
IL_9HA4_015AAA cross-strand stack
IL_9HA4_016Single stack bend
IL_9HA4_017Isolated non-canonical cWW pair
IL_9HA4_018No text annotation
IL_9HA4_01990 degree turn
IL_9HA4_022Single stack bend
IL_9HA4_0237x7 Sarcin-Ricin with intercalated A; G-bulge
IL_9HA4_024Single bulged G
IL_9HA4_026UAA/GAN
IL_9HA4_028Single bulged U
IL_9HA4_029No text annotation
IL_9HA4_031No text annotation
IL_9HA4_032Kink-turn
IL_9HA4_033Major groove platform; stack outside cWW
IL_9HA4_034Major groove minor groove platform with tHH
IL_9HA4_035No text annotation
IL_9HA4_036UAA/GAN
IL_9HA4_037No text annotation
IL_9HA4_038tSH-tHW-tHS
IL_9HA4_039No text annotation
IL_9HA4_040No text annotation
IL_9HA4_041Tandem non-canonical cWW pairs
IL_9HA4_042tSH-tHW
IL_9HA4_043Single bulged U
IL_9HA4_044No text annotation
IL_9HA4_045tSH-tHW-tHS
IL_9HA4_046180 degree turn
IL_9HA4_047Isolated non-canonical cWW pair
IL_9HA4_048Single bulged A
IL_9HA4_049UAA/GAN variation
IL_9HA4_0506x5 Sarcin-Ricin; G-bulge
IL_9HA4_051Triple sheared
IL_9HA4_052Single bulged C
IL_9HA4_053Major groove platform
IL_9HA4_054Double sheared
IL_9HA4_055Single bulged U
IL_9HA4_056tSH-tHS-tHW
IL_9HA4_057Sarcin-Ricin target in LSU H95; G-bulge
IL_9HA4_060Multiple bulged bases
IL_9HA4_061UAA/GAN with extra cWW
IL_9HA4_062Single bulged A
IL_9HA4_063No text annotation
IL_9HA4_064Major groove intercalation
IL_9HA4_066tHS double platform
IL_9HA4_067Major groove intercalation
IL_9HA4_068No text annotation
IL_9HA4_069No text annotation
IL_9HA4_070Symmetric double minor groove platform
IL_9HA4_071Bacterial 5S Loop E

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9HA4_0011/A/30:31,
1/A/474:481,
1/A/509:510
No text annotation
homologous
J3_4WF9_010
J3_68715.1
J3_9HA4_0021/A/32:35,
1/A/445:461,
1/A/468:473
No text annotation
homologous
J3_5J7L_067
NA
J3_9HA4_0111/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888
No text annotation
homologous
J3_5J7L_048
NA
J4_9HA4_0011/A/268:269,
1/A/370:375,
1/A/399:406,
1/A/421:424
No text annotation
homologous
J4_5J7L_018
NA
J4_9HA4_0051/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603
No text annotation
homologous
J4_5J7L_023
NA
J6_9HA4_0011/A/45:46,
1/A/179:183,
1/A/214:225,
1/A/230:235,
1/A/262:266,
1/A/426:433
No text annotation
J7_9HA4_0021/A/817:822,
1/A/835:838,
1/A/940:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_9HA4_003No text annotation
J3_9HA4_004No text annotation
J3_9HA4_005No text annotation
J3_9HA4_006No text annotation
J3_9HA4_007No text annotation
J3_9HA4_008No text annotation
J3_9HA4_009No text annotation
J3_9HA4_010No text annotation
J3_9HA4_012No text annotation
J4_9HA4_002No text annotation
J4_9HA4_003No text annotation
J4_9HA4_004No text annotation
J4_9HA4_006No text annotation
J4_9HA4_007No text annotation
J4_9HA4_008No text annotation
J5_9HA4_001No text annotation
J5_9HA4_002No text annotation
J5_9HA4_003No text annotation
J7_9HA4_001No text annotation

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