HL_9HA4_015

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9HA4|1|A|C|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA4_015 not in the Motif Atlas

Homologous match to HL_9DFE_015

Geometric discrepancy: 0.2036

The information below is about HL_9DFE_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9HA4|1|A|C|487
9HA4|1|A|G|488
9HA4|1|A|G|489
9HA4|1|A|C|490
9HA4|1|A|G|491
9HA4|1|A|A|492
9HA4|1|A|G|493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain y

Apidaecins type 22